A C D E F G J M N P R S T U W misc
plyinteractions-package | plyinteractions: a grammar of data manipulation for genomic interactions |
anchor.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
anchors1 | Enhanced GInteractions getters |
anchors1-method | Enhanced GInteractions getters |
anchors2 | Enhanced GInteractions getters |
anchors2-method | Enhanced GInteractions getters |
anchor_3p.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_3p.PinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_5p.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_5p.PinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_center.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_center.PinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_end.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_end.PinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_start.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
anchor_start.PinnedGInteractions | Manage GInteractions anchors with plyranges |
annotate | Annotate both anchors of a GInteractions |
annotate-method | Annotate both anchors of a GInteractions |
annotate_directed | Annotate both anchors of a GInteractions |
annotate_directed-method | Annotate both anchors of a GInteractions |
arrange.GInteractions | Arrange a GInteractions by a column |
as_ginteractions | Construct a GInteractions object from a tibble, DataFrame or data.frame |
count.GInteractions | Count or tally GInteractions per group |
count.GroupedGInteractions | Count or tally GInteractions per group |
count_overlaps.GInteractions | Count overlaps between a query GInteractions and a GRanges |
count_overlaps.PinnedGInteractions | Count overlaps between a query GInteractions and a GRanges |
count_overlaps_directed.GInteractions | Count overlaps between a query GInteractions and a GRanges |
count_overlaps_directed.PinnedGInteractions | Count overlaps between a query GInteractions and a GRanges |
dplyr-arrange | Arrange a GInteractions by a column |
dplyr-count | Count or tally GInteractions per group |
dplyr-filter | Subset a GInteractions with tidyverse-like 'filter' |
dplyr-group_by | Group GInteractions by columns |
dplyr-mutate | Mutate columns from a GInteractions object |
dplyr-rename | Rename columns from a GInteractions with tidyverse-like 'rename' |
dplyr-select | Select columns within GInteractions metadata columns |
dplyr-slice | Slice a GInteractions rows by their index |
dplyr-summarise | Summarize GInteractions per group |
dplyr-summarize | Summarize GInteractions per group |
end1 | Enhanced GInteractions getters |
end1-method | Enhanced GInteractions getters |
end2 | Enhanced GInteractions getters |
end2-method | Enhanced GInteractions getters |
filter.GInteractions | Subset a GInteractions with tidyverse-like 'filter' |
filter_by_non_overlaps.GInteractions | Filter GInteractions overlapping with a GRanges |
filter_by_non_overlaps.PinnedGInteractions | Filter GInteractions overlapping with a GRanges |
filter_by_overlaps.GInteractions | Filter GInteractions overlapping with a GRanges |
filter_by_overlaps.PinnedGInteractions | Filter GInteractions overlapping with a GRanges |
find_overlaps.GInteractions | Find overlaps between a query GInteractions and a GRanges |
find_overlaps.PinnedGInteractions | Find overlaps between a query GInteractions and a GRanges |
find_overlaps_directed.GInteractions | Find overlaps between a query GInteractions and a GRanges |
find_overlaps_directed.PinnedGInteractions | Find overlaps between a query GInteractions and a GRanges |
flank_downstream | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_downstream.PinnedGInteractions | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_downstream.Ranges | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_left | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_left.PinnedGInteractions | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_left.Ranges | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_right | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_right.PinnedGInteractions | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_right.Ranges | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_upstream | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_upstream.PinnedGInteractions | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
flank_upstream.Ranges | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
ginteractions-anchor | Manage GInteractions anchors with plyranges |
ginteractions-annotate | Annotate both anchors of a GInteractions |
ginteractions-count-overlaps | Count overlaps between a query GInteractions and a GRanges |
ginteractions-filter-overlaps | Filter GInteractions overlapping with a GRanges |
ginteractions-find-overlaps | Find overlaps between a query GInteractions and a GRanges |
ginteractions-getters | Enhanced GInteractions getters |
ginteractions-join-overlap-left | Join overlaps between a query GInteractions and a GRanges |
ginteractions-pin | Pin GInteractions by anchors set (anchors1 or anchors2). |
group-group_data | GInteractions grouping metadata |
groups.GroupedGInteractions | GInteractions grouping metadata |
group_by.DelegatingGInteractions | Group GInteractions by columns |
group_by.GInteractions | Group GInteractions by columns |
group_data.GroupedGInteractions | GInteractions grouping metadata |
group_indices.GroupedGInteractions | GInteractions grouping metadata |
group_keys.GroupedGInteractions | GInteractions grouping metadata |
group_size.GroupedGInteractions | GInteractions grouping metadata |
group_vars.GInteractions | GInteractions grouping metadata |
group_vars.GroupedGInteractions | GInteractions grouping metadata |
join_overlap_left.GInteractions | Join overlaps between a query GInteractions and a GRanges |
join_overlap_left.PinnedGInteractions | Join overlaps between a query GInteractions and a GRanges |
join_overlap_left_directed.GInteractions | Join overlaps between a query GInteractions and a GRanges |
join_overlap_left_directed.PinnedGInteractions | Join overlaps between a query GInteractions and a GRanges |
mutate.GInteractions | Mutate columns from a GInteractions object |
n_groups.GroupedGInteractions | GInteractions grouping metadata |
pin | Pin GInteractions by anchors set (anchors1 or anchors2). |
pin-method | Pin GInteractions by anchors set (anchors1 or anchors2). |
pinned_anchors | Pin GInteractions by anchors set (anchors1 or anchors2). |
pinned_anchors-method | Pin GInteractions by anchors set (anchors1 or anchors2). |
pin_anchors1 | Pin GInteractions by anchors set (anchors1 or anchors2). |
pin_anchors2 | Pin GInteractions by anchors set (anchors1 or anchors2). |
pin_by | Pin GInteractions by anchors set (anchors1 or anchors2). |
pin_first | Pin GInteractions by anchors set (anchors1 or anchors2). |
pin_second | Pin GInteractions by anchors set (anchors1 or anchors2). |
plyinteractions | plyinteractions: a grammar of data manipulation for genomic interactions |
plyranges-flank | Generate flanking regions from pinned anchors of a GInteractions object with plyranges |
plyranges-shift | Shift pinned anchors of a GInteractions object with plyranges |
plyranges-stretch | Stretch pinned anchors of a GInteractions object with plyranges |
ranges1 | Enhanced GInteractions getters |
ranges1-method | Enhanced GInteractions getters |
ranges2 | Enhanced GInteractions getters |
ranges2-method | Enhanced GInteractions getters |
rename.GInteractions | Rename columns from a GInteractions with tidyverse-like 'rename' |
replace_anchors | Replace anchors of a GInteractions |
replace_anchors-method | Replace anchors of a GInteractions |
select.GInteractions | Select columns within GInteractions metadata columns |
seqnames1 | Enhanced GInteractions getters |
seqnames1-method | Enhanced GInteractions getters |
seqnames2 | Enhanced GInteractions getters |
seqnames2-method | Enhanced GInteractions getters |
shift_downstream | Shift pinned anchors of a GInteractions object with plyranges |
shift_downstream.PinnedGInteractions | Shift pinned anchors of a GInteractions object with plyranges |
shift_downstream.Ranges | Shift pinned anchors of a GInteractions object with plyranges |
shift_left | Shift pinned anchors of a GInteractions object with plyranges |
shift_left.PinnedGInteractions | Shift pinned anchors of a GInteractions object with plyranges |
shift_left.Ranges | Shift pinned anchors of a GInteractions object with plyranges |
shift_right | Shift pinned anchors of a GInteractions object with plyranges |
shift_right.PinnedGInteractions | Shift pinned anchors of a GInteractions object with plyranges |
shift_right.Ranges | Shift pinned anchors of a GInteractions object with plyranges |
shift_upstream | Shift pinned anchors of a GInteractions object with plyranges |
shift_upstream.PinnedGInteractions | Shift pinned anchors of a GInteractions object with plyranges |
shift_upstream.Ranges | Shift pinned anchors of a GInteractions object with plyranges |
slice.GInteractions | Slice a GInteractions rows by their index |
start1 | Enhanced GInteractions getters |
start1-method | Enhanced GInteractions getters |
start2 | Enhanced GInteractions getters |
start2-method | Enhanced GInteractions getters |
strand1 | Enhanced GInteractions getters |
strand1-method | Enhanced GInteractions getters |
strand2 | Enhanced GInteractions getters |
strand2-method | Enhanced GInteractions getters |
stretch.AnchoredPinnedGInteractions | Stretch pinned anchors of a GInteractions object with plyranges |
stretch.PinnedGInteractions | Stretch pinned anchors of a GInteractions object with plyranges |
summarise.GroupedGInteractions | Summarize GInteractions per group |
summarize.GroupedGInteractions | Summarize GInteractions per group |
tally.GroupedGInteractions | Count or tally GInteractions per group |
unanchor.AnchoredPinnedGInteractions | Manage GInteractions anchors with plyranges |
ungroup.GroupedGInteractions | Group GInteractions by columns |
unpin | Pin GInteractions by anchors set (anchors1 or anchors2). |
unpin-method | Pin GInteractions by anchors set (anchors1 or anchors2). |
width1 | Enhanced GInteractions getters |
width1-method | Enhanced GInteractions getters |
width2 | Enhanced GInteractions getters |
width2-method | Enhanced GInteractions getters |
$-method | Enhanced GInteractions getters |