Differential Expression Meta-Analysis


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Documentation for package ‘DExMA’ version 1.10.7

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allSameID Set all datasets in the same ID
batchRemove Elimination of covariates batch effect or bias
calculateES Calculation of Effects Sizes and their variance
createObjectMA Creation of the object to use in meta-analysis
dataLog Auxiliary function to check if data are log transfromed and transformed if it are not log-transformed
downloadGEOData Download datasets from GEO database
elementObjectMA Creation of the object to use in meta-analysis
heterogeneityTest Checking the heterogeneity of the different studies
makeHeatmap Visualization of the meta-analysis results
metaAnalysisDE Performing Meta-analysis
missGenesImput Imputation of unmeasured genes
pvalueIndAnalysis Calculation p-value for each gene and study